MLOC_5313 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.4658739.098628.99821.8038
LEAShoots from the seedlings (10 cm shoot stage)36.350129.336731.359324.1919
INF1Young developing inflorescences (5mm)24.10620.880720.096515.3776
INF2Developing inflorescences (1-1.5 cm)35.988935.658631.827731.7196
ROORoots from the seedlings (10 cm shoot stage)15.044922.429217.755620.0799
NODDeveloping tillers at six leaf stage, 3rd internode19.092126.135414.633567.0843
CAR5Developing grain, bracts removed (5 DPA)50.621829.003238.956230.1595
CAR15Developing grain, bracts removed (15 DPA)18.43619.942117.76635.3555



CDS Structure of MLOC_5313






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5313.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5313.1CUST_7485_PI427708083AvailableAvailablecontig_136117 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g42439.1 +1 7e-42 150 72/79 (91%) 13110.m03987 protein heat shock protein DnaJ, putative, expressed
TAIR PP10 AT2G26890.1 +1 1e-38 140 65/79 (82%) | Symbols: GRV2, KAM2 | DNAJ heat shock N-terminal domain-containing protein | chr2:11462327-11473841 REVERSE LENGTH=2554