- Predicted Gene MLOC_53117
MLOC_53117 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 35.1715 | 26.9008 | 30.5723 | 28.5901 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 23.069 | 15.9817 | 16.3021 | 14.5065 |
| INF1 | Young developing inflorescences (5mm) | 31.1331 | 35.2082 | 31.715 | 26.2584 |
| INF2 | Developing inflorescences (1-1.5 cm) | 36.206 | 37.1827 | 40.3255 | 37.7634 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 71.7592 | 54.1259 | 57.4418 | 60.8628 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 50.7002 | 52.7887 | 65.0649 | 146.995 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 45.7387 | 44.789 | 42.8817 | 39.1068 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 17.8892 | 17.6237 | 15.6949 | 38.9951 |
CDS Structure of MLOC_53117
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_53117.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os05g24560.1 |
-3 |
3e-147 |
436 |
213/255 (84%) |
13105.m02511 protein NC domain-containing protein, putative, expressed |
| TAIR PP10 |
AT3G02700.1 |
-3 |
2e-89 |
284 |
144/236 (61%) |
NC domain-containing protein-related | chr3:581727-582813 REVERSE LENGTH=252 |
