MLOC_53116 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.170861.882091.724511.68505
LEAShoots from the seedlings (10 cm shoot stage)31.184950.426648.835438.5317
INF1Young developing inflorescences (5mm)2.38021.992751.171411.60092
INF2Developing inflorescences (1-1.5 cm)1.143861.318541.345151.42487
ROORoots from the seedlings (10 cm shoot stage)00.2800080.2811510.281996
NODDeveloping tillers at six leaf stage, 3rd internode7.172526.312317.689523.8122
CAR5Developing grain, bracts removed (5 DPA)3.900994.108853.454413.87569
CAR15Developing grain, bracts removed (15 DPA)0.3967980.5414890.8813951.2765



CDS Structure of MLOC_53116






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53116.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363084NoneNoneNoneNone
MLOC_53116.5CUST_18093_PI427708080AvailableAvailablecontig_38036 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g04260.1 +1 0.0 637 353/427 (83%) 13112.m00405 protein astaxanthin synthase KC28, putative
TAIR PP10 AT1G50450.1 +1 0.0 561 268/371 (72%) Saccharopine dehydrogenase | chr1:18687902-18690348 REVERSE LENGTH=428