MLOC_53112 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6385751.113941.065530.848905
LEAShoots from the seedlings (10 cm shoot stage)1.001930.2346120.2737770.42986
INF1Young developing inflorescences (5mm)1.663371.345221.213641.07382
INF2Developing inflorescences (1-1.5 cm)0.6623451.010970.8585060.811147
ROORoots from the seedlings (10 cm shoot stage)0.3333310.6903820.9092470.671194
NODDeveloping tillers at six leaf stage, 3rd internode0.8041390.8304711.146872.57153
CAR5Developing grain, bracts removed (5 DPA)0.8726791.167411.462570.951748
CAR15Developing grain, bracts removed (15 DPA)0.2275840.3108690.2583860.524635



CDS Structure of MLOC_53112






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53112.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53112.1CUST_13029_PI427708080AvailableAvailablecontig_38066 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g17510.1 -1 0.0 957 469/598 (78%) 13103.m02089 protein pentatricopeptide, putative, expressed
TAIR PP10 AT2G37310.1 -1 3e-166 521 272/601 (45%) Pentatricopeptide repeat (PPR) superfamily protein | chr2:15665102-15667075 REVERSE LENGTH=657