MLOC_53111 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.9316381.387610.95991.02322
LEAShoots from the seedlings (10 cm shoot stage)6.607910.9330111.645752.30403
INF1Young developing inflorescences (5mm)2.158833.306362.520872.36815
INF2Developing inflorescences (1-1.5 cm)0.6994980.9975741.234881.12992
ROORoots from the seedlings (10 cm shoot stage)2.080322.518722.735082.62916
NODDeveloping tillers at six leaf stage, 3rd internode9.283546.569752.9849718.9476
CAR5Developing grain, bracts removed (5 DPA)4.757084.879035.244145.38088
CAR15Developing grain, bracts removed (15 DPA)0.2137490.2448710.3251860.591353



CDS Structure of MLOC_53111






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53111.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355354NoneNoneNoneNone
MLOC_53111.2CUST_3054_PI427708080AvailableAvailablecontig_38066 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g17500.1 -2 5e-47 172 119/231 (52%) 13103.m02088 protein expressed protein
TAIR PP10 AT2G37300.1 -2 1e-16 79 35/63 (56%) unknown protein; Has 93 Blast hits to 62 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi - 19; Plants - 25; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). | chr2:15662845-15663547 REVERSE LENGTH=169