MLOC_53087 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3096261.085620.8100250.676196
LEAShoots from the seedlings (10 cm shoot stage)5.4706211.043810.06677.79415
INF1Young developing inflorescences (5mm)1.883252.164572.435222.04108
INF2Developing inflorescences (1-1.5 cm)2.237231.995072.322312.57592
ROORoots from the seedlings (10 cm shoot stage)0.4786870.5351970.6546451.0324
NODDeveloping tillers at six leaf stage, 3rd internode2.729723.110643.5923810.3555
CAR5Developing grain, bracts removed (5 DPA)1.463811.283321.303831.78113
CAR15Developing grain, bracts removed (15 DPA)2.456512.178232.459516.10524



CDS Structure of MLOC_53087






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53087.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53087.2CUST_13026_PI427708080AvailableAvailablecontig_38043 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g01460.1 +3 0.0 907 516/678 (76%) 13106.m00049 protein expressed protein
TAIR PP10 AT2G46915.1 +3 0.0 564 335/650 (52%) Protein of unknown function (DUF3754) | chr2:19274018-19277707 REVERSE LENGTH=708