MLOC_53086 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.162581.032751.448861.32595
LEAShoots from the seedlings (10 cm shoot stage)0.9216970.2534350.323360.458715
INF1Young developing inflorescences (5mm)0.4520850.6849430.5697240.534115
INF2Developing inflorescences (1-1.5 cm)0.6889060.7690080.7065080.858025
ROORoots from the seedlings (10 cm shoot stage)1.415421.032011.465931.57862
NODDeveloping tillers at six leaf stage, 3rd internode6.772597.350630.060881321.1052
CAR5Developing grain, bracts removed (5 DPA)0.1353780.180680.147250.173816
CAR15Developing grain, bracts removed (15 DPA)0.05767270.0205700.13759



CDS Structure of MLOC_53086






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53086.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53086.2CUST_13025_PI427708080AvailableAvailablecontig_38043 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g01480.1 +1 6e-137 412 261/366 (71%) 13106.m00051 protein NAC domain containing protein, putative, expressed
TAIR PP10 AT1G12260.1 +1 4e-95 303 197/392 (50%) | Symbols: VND4, EMB2749, ANAC007, NAC007 | NAC 007 | chr1:4163058-4164486 REVERSE LENGTH=395