MLOC_53082 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.537494.788844.415574.80801
LEAShoots from the seedlings (10 cm shoot stage)4.59523.871064.675733.83815
INF1Young developing inflorescences (5mm)6.173086.281156.883375.65602
INF2Developing inflorescences (1-1.5 cm)4.960415.171946.213046.10828
ROORoots from the seedlings (10 cm shoot stage)4.197965.348715.316396.4503
NODDeveloping tillers at six leaf stage, 3rd internode1.904612.287294.469468.83077
CAR5Developing grain, bracts removed (5 DPA)3.535613.858213.263573.68326
CAR15Developing grain, bracts removed (15 DPA)1.263211.186150.9647832.88332



CDS Structure of MLOC_53082






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53082.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249906.1NoneNoneNoneNone
MLOC_53082.2CUST_18092_PI427708080AvailableAvailablecontig_38036 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g43690.1 +2 0.0 753 378/433 (87%) 13104.m04343 protein DUF647 domain containing protein, putative, expressed
TAIR PP10 AT2G31190.2 +2 0.0 553 278/434 (64%) | Symbols: RUS2 | Protein of unknown function, DUF647 | chr2:13291458-13293681 REVERSE LENGTH=432