MLOC_53077 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.81816.063416.678917.5339
LEAShoots from the seedlings (10 cm shoot stage)12.22015.687355.395297.15433
INF1Young developing inflorescences (5mm)39.469643.061746.939239.6014
INF2Developing inflorescences (1-1.5 cm)73.679766.338572.698583.5213
ROORoots from the seedlings (10 cm shoot stage)11.336617.018316.723722.3619
NODDeveloping tillers at six leaf stage, 3rd internode13.380717.500718.94165.8691
CAR5Developing grain, bracts removed (5 DPA)26.813427.085927.83429.2751
CAR15Developing grain, bracts removed (15 DPA)10.27249.83689.3925324.8027



CDS Structure of MLOC_53077






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53077.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355914NoneNoneNoneNone
MLOC_53077.1CUST_18091_PI427708080AvailableAvailablecontig_38036 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g39660.2 +3 0.0 613 339/537 (63%) 13109.m03984 protein ZOS9-21 - C2H2 zinc finger protein, expressed
TAIR PP10 AT4G25610.1 +3 2e-90 298 199/522 (38%) C2H2-like zinc finger protein | chr4:13063801-13066860 FORWARD LENGTH=586