MLOC_53069 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains42.382151.714848.628938.6172
LEAShoots from the seedlings (10 cm shoot stage)41.216740.515534.497727.2136
INF1Young developing inflorescences (5mm)29.321435.970837.163621.6516
INF2Developing inflorescences (1-1.5 cm)23.656224.264721.909621.3836
ROORoots from the seedlings (10 cm shoot stage)33.114121.135814.020322.4032
NODDeveloping tillers at six leaf stage, 3rd internode19.960825.475636.467769.1264
CAR5Developing grain, bracts removed (5 DPA)31.164734.016331.426124.5567
CAR15Developing grain, bracts removed (15 DPA)14.855314.823514.299525.4603



CDS Structure of MLOC_53069






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53069.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53069.1CUST_12731_PI427708083AvailableAvailablecontig_380314 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g47540.5 +3 2e-26 102 46/49 (94%) 13105.m10409 protein CPuORF26 - conserved peptide uORF-containing transcript, expressed
TAIR PP10 AT3G18000.1 +3 2e-22 92 41/49 (84%) | Symbols: NMT1, XPL1, PEAMT | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:6154578-6157331 FORWARD LENGTH=491