MLOC_53060 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains327.893155.765170.388206.523
LEAShoots from the seedlings (10 cm shoot stage)91.688266.767398.439370.4743
INF1Young developing inflorescences (5mm)253.57241.028243.99220.554
INF2Developing inflorescences (1-1.5 cm)197.74178.148191.596217.33
ROORoots from the seedlings (10 cm shoot stage)223.099179.683173.845215.922
NODDeveloping tillers at six leaf stage, 3rd internode11.366210.598529.454841.3034
CAR5Developing grain, bracts removed (5 DPA)136.683142.419142.956146.334
CAR15Developing grain, bracts removed (15 DPA)33.048129.390324.098474.1332



CDS Structure of MLOC_53060






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53060.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53060.1CUST_13022_PI427708080AvailableAvailablecontig_38027 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g27769.1 +3 1e-48 157 85/86 (99%) 13102.m03030 protein 40S ribosomal protein S27, putative, expressed
TAIR PP10 AT3G61110.1 +3 8e-47 152 80/86 (93%) | Symbols: ARS27A, RS27A | ribosomal protein S27 | chr3:22611710-22612632 FORWARD LENGTH=86