MLOC_53047 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains60.726663.454755.735479.4072
LEAShoots from the seedlings (10 cm shoot stage)47.744244.629544.156946.7809
INF1Young developing inflorescences (5mm)80.255891.170989.804594.5383
INF2Developing inflorescences (1-1.5 cm)108.902116.333106.752161.206
ROORoots from the seedlings (10 cm shoot stage)50.462771.275160.6873116.534
NODDeveloping tillers at six leaf stage, 3rd internode31.138143.802747.9938195.891
CAR5Developing grain, bracts removed (5 DPA)46.158748.436738.225759.8545
CAR15Developing grain, bracts removed (15 DPA)13.946712.508811.184738.3969



CDS Structure of MLOC_53047






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53047.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371956NoneNoneNoneNone
MLOC_53047.1CUST_3045_PI427708080AvailableAvailablecontig_38017 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g12530.1 +1 1e-120 358 202/257 (79%) 13106.m01368 protein CS domain containing protein, putative, expressed
TAIR PP10 AT5G53400.1 +1 1e-83 262 122/168 (73%) | Symbols: BOB1 | HSP20-like chaperones superfamily protein | chr5:21661588-21663383 FORWARD LENGTH=304