MLOC_52980 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.9795631.064260.9607361.1819
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0.2738180.2705730.3529670.387235
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_52980






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52980.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52980.1CUST_13012_PI427708080AvailableAvailablecontig_37952 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g48630.1 -2 1e-179 528 380/585 (65%) 13106.m05172 protein ANTH/ENTH domain containing protein, putative
TAIR PP10 AT5G57200.1 -2 3e-134 412 291/530 (55%) ENTH/ANTH/VHS superfamily protein | chr5:23177696-23180601 FORWARD LENGTH=591