MLOC_52962 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains29.02121.782727.46324.6065
LEAShoots from the seedlings (10 cm shoot stage)15.893418.981516.946713.8532
INF1Young developing inflorescences (5mm)17.954420.671818.111217.4106
INF2Developing inflorescences (1-1.5 cm)14.022715.522616.770818.0477
ROORoots from the seedlings (10 cm shoot stage)56.209235.418453.350344.608
NODDeveloping tillers at six leaf stage, 3rd internode102.556101.45889.1195275.133
CAR5Developing grain, bracts removed (5 DPA)10.753612.866112.10112.6075
CAR15Developing grain, bracts removed (15 DPA)2.198891.5322.071824.89178



CDS Structure of MLOC_52962






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52962.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358515NoneNoneNoneNone
AK358739NoneNoneNoneNone
AK368175NoneNoneNoneNone
MLOC_52962.3CUST_3035_PI427708080AvailableAvailablecontig_37937 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g46260.1 +3 2e-121 366 199/258 (77%) 13103.m04976 protein DUF581 domain containing protein, expressed
TAIR PP10 AT3G22550.1 +3 3e-29 118 88/230 (38%) Protein of unknown function (DUF581) | chr3:7991827-7992805 REVERSE LENGTH=267