MLOC_5296 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 26.2487 | 20.4547 | 23.6338 | 22.8334 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 31.6073 | 32.8293 | 38.342 | 27.7993 |
| INF1 | Young developing inflorescences (5mm) | 25.1957 | 18.5457 | 15.1474 | 16.2145 |
| INF2 | Developing inflorescences (1-1.5 cm) | 10.561 | 9.82663 | 15.2905 | 11.7523 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 32.4705 | 37.9663 | 35.3647 | 42.664 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 60.7109 | 46.6215 | 37.4349 | 130.269 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 24.4467 | 23.8583 | 22.0721 | 22.0298 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 10.0677 | 9.84231 | 8.77174 | 21.9103 |
CDS Structure of MLOC_5296
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_5296.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os05g01250.1 |
-1 |
4e-144 |
427 |
210/232 (91%) |
13105.m00046 protein SNF7 domain containing protein, putative, expressed |
| TAIR PP10 |
AT3G10640.1 |
-1 |
8e-121 |
367 |
178/234 (76%) |
| Symbols: VPS60.1 | SNF7 family protein | chr3:3323501-3324905 REVERSE LENGTH=235 |
