MLOC_52954 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8215460.8577590.9594970.862819
LEAShoots from the seedlings (10 cm shoot stage)0.7787320.3456680.2823870.412189
INF1Young developing inflorescences (5mm)0.7292490.6206970.6923340.544838
INF2Developing inflorescences (1-1.5 cm)1.08280.976360.9978841.09187
ROORoots from the seedlings (10 cm shoot stage)0.2364020.2163750.5739630.310134
NODDeveloping tillers at six leaf stage, 3rd internode0.8387020.5227460.447121.74817
CAR5Developing grain, bracts removed (5 DPA)0.6981950.5942610.7057860.629518
CAR15Developing grain, bracts removed (15 DPA)0.2008050.1423010.2491710.410375



CDS Structure of MLOC_52954






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52954.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52954.4CUST_13007_PI427708080AvailableAvailablecontig_37934 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g43760.1 +3 7e-84 278 166/229 (72%) 13108.m04742 protein carrier, putative, expressed
TAIR PP10 AT2G17080.1 +2 4e-19 91 74/253 (29%) Arabidopsis protein of unknown function (DUF241) | chr2:7433326-7434117 REVERSE LENGTH=263