MLOC_52953 FPKM values

FPKM by TreatmentFPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.


Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.18044900
LEAShoots from the seedlings (10 cm shoot stage)0.312012000
INF1Young developing inflorescences (5mm)0.82350.87210900
INF2Developing inflorescences (1-1.5 cm)0.6496320.2871090.6085690
ROORoots from the seedlings (10 cm shoot stage)00.19913700
NODDeveloping tillers at six leaf stage, 3rd internode00.23032200
CAR5Developing grain, bracts removed (5 DPA)0.19065100.1928790
CAR15Developing grain, bracts removed (15 DPA)0.2996740.16165500



CDS Structure of MLOC_52953






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by AK357617
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357617CUST_13648_PI427708083NoneNoneNone
MLOC_1559.2NoneAvailableAvailablecontig_113740 (Mapped)
MLOC_27161.1NoneAvailableNonecontig_181068 (Mapped)
MLOC_46275.2NoneAvailableNonecontig_287886 (Not mapped)
MLOC_49306.1NoneAvailableNonecontig_339312 (Not mapped)
MLOC_52417.1NoneAvailableNonecontig_375175 (Mapped)
MLOC_52953.1NoneAvailableNonecontig_379334 (Mapped)
MLOC_69541.2NoneAvailableNonecontig_56586 (Mapped)
MLOC_81547.1NoneAvailableNonecontig_969141 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6None-----
TAIR PP10None-----