MLOC_52950 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.049926.849476.804266.75494
LEAShoots from the seedlings (10 cm shoot stage)7.894867.795037.403946.86276
INF1Young developing inflorescences (5mm)11.013112.072410.67519.79695
INF2Developing inflorescences (1-1.5 cm)13.811915.967313.539316.5909
ROORoots from the seedlings (10 cm shoot stage)6.502567.393327.240329.37415
NODDeveloping tillers at six leaf stage, 3rd internode4.95225.509786.1442819.4241
CAR5Developing grain, bracts removed (5 DPA)11.576411.207211.721111.5667
CAR15Developing grain, bracts removed (15 DPA)5.680294.985025.1566912.4907



CDS Structure of MLOC_52950






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52950.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362705NoneNoneNoneNone
MLOC_52950.1CUST_3034_PI427708080AvailableAvailablecontig_37932 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g53590.2 -2 0.0 861 435/708 (61%) 13103.m05851 protein expressed protein
TAIR PP10 AT1G05410.1 -2 9e-108 348 191/485 (39%) Protein of unknown function (DUF1423) | chr1:1585504-1587268 REVERSE LENGTH=471