MLOC_52949 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.656282.771382.554523.20516
LEAShoots from the seedlings (10 cm shoot stage)0.9188830.05228530.1612350.297831
INF1Young developing inflorescences (5mm)9.4866310.15019.663819.22591
INF2Developing inflorescences (1-1.5 cm)7.122129.121487.014359.88229
ROORoots from the seedlings (10 cm shoot stage)3.092652.262652.944612.78195
NODDeveloping tillers at six leaf stage, 3rd internode00.01926460.02213030.0975681
CAR5Developing grain, bracts removed (5 DPA)1.733211.587652.002921.99469
CAR15Developing grain, bracts removed (15 DPA)0.167480.04102720.2405680.366616



CDS Structure of MLOC_52949






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52949.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52949.2CUST_13005_PI427708080AvailableAvailablecontig_37932 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g53580.1 +1 2e-115 349 225/323 (70%) 13103.m05850 protein expressed protein
TAIR PP10 AT1G05440.1 +1 1e-30 123 71/182 (39%) C-8 sterol isomerases | chr1:1596374-1597843 REVERSE LENGTH=384