MLOC_52923 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.742645.974626.46486.81416
LEAShoots from the seedlings (10 cm shoot stage)7.179931.232873.909683.45703
INF1Young developing inflorescences (5mm)38.238.958932.227134.3432
INF2Developing inflorescences (1-1.5 cm)26.635328.691825.437233.4602
ROORoots from the seedlings (10 cm shoot stage)5.580515.410956.251826.60964
NODDeveloping tillers at six leaf stage, 3rd internode0.269630.207390.1347770.557905
CAR5Developing grain, bracts removed (5 DPA)10.893614.535210.16413.0191
CAR15Developing grain, bracts removed (15 DPA)0.5679720.05447420.4821290.912409



CDS Structure of MLOC_52923






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52923.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374054NoneNoneNoneNone
MLOC_52923.1CUST_3028_PI427708080AvailableAvailablecontig_37908 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g40240.1 +1 2e-32 117 49/60 (82%) 13107.m04181 protein GASR9 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed
TAIR PP10 AT5G59845.1 +1 3e-17 76 36/63 (57%) Gibberellin-regulated family protein | chr5:24111443-24111808 FORWARD LENGTH=89