MLOC_52918 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.693431.905862.154791.87876
LEAShoots from the seedlings (10 cm shoot stage)2.387290.1948340.3261750.777864
INF1Young developing inflorescences (5mm)12.21386.494826.110127.19728
INF2Developing inflorescences (1-1.5 cm)1.458391.781412.054561.9223
ROORoots from the seedlings (10 cm shoot stage)2.063780.9015161.330851.07286
NODDeveloping tillers at six leaf stage, 3rd internode2.089630.7622770.4400541.19578
CAR5Developing grain, bracts removed (5 DPA)1.926091.076570.6953951.20681
CAR15Developing grain, bracts removed (15 DPA)0.1050910.08494860.1010440.248572



CDS Structure of MLOC_52918






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52918.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52918.1CUST_12725_PI427708083AvailableAvailablecontig_37905 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g32670.1 -3 3e-38 144 127/185 (69%) 13109.m03260 protein UDP-glucuronate 4-epimerase, putative, expressed
TAIR PP10 AT3G23820.1 -3 1e-21 96 51/79 (65%) | Symbols: GAE6 | UDP-D-glucuronate 4-epimerase 6 | chr3:8603645-8605027 FORWARD LENGTH=460