MLOC_52907 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.711263.182934.736244.05717
LEAShoots from the seedlings (10 cm shoot stage)6.417699.4057413.6467.75465
INF1Young developing inflorescences (5mm)1.320941.415531.398491.17645
INF2Developing inflorescences (1-1.5 cm)1.888861.594131.344941.78928
ROORoots from the seedlings (10 cm shoot stage)28.767416.068627.055621.922
NODDeveloping tillers at six leaf stage, 3rd internode28.057326.992742.776479.0789
CAR5Developing grain, bracts removed (5 DPA)6.388877.491876.99726.69774
CAR15Developing grain, bracts removed (15 DPA)1.188351.005220.9654172.61681



CDS Structure of MLOC_52907






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52907.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK353838NoneNoneNoneNone
MLOC_52907.2CUST_3025_PI427708080AvailableAvailablecontig_37900 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g14590.1 +2 6e-154 473 255/343 (74%) 13103.m01708 protein calcium-binding EF hand family protein, putative, expressed
TAIR PP10 AT4G38810.2 +2 3e-112 360 191/346 (55%) Calcium-binding EF-hand family protein | chr4:18115607-18118860 REVERSE LENGTH=375