morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_52892

Gene IDMLOC_52892
Source Contig contig_378873

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

morexGenes

Links

MLOC_52892 FPKM values

FPKM by Treatment	FPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	1.9289	5.28188	5.81089	0
LEA	Shoots from the seedlings (10 cm shoot stage)	8.04886	9.77324	12.3297	0
INF1	Young developing inflorescences (5mm)	6.51596	9.91066	13.9647	0
INF2	Developing inflorescences (1-1.5 cm)	18.2721	13.5885	15.4009	0
ROO	Roots from the seedlings (10 cm shoot stage)	3.35851	3.27316	5.31701	0
NOD	Developing tillers at six leaf stage, 3rd internode	4.75824	8.40732	8.63869	0
CAR5	Developing grain, bracts removed (5 DPA)	9.26764	7.11291	7.2851	0
CAR15	Developing grain, bracts removed (15 DPA)	2.84	2.79577	2.85208	0

CDS Structure of MLOC_52892

Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by AK366111

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK366111	CUST_21235_PI427708080	None	None	None
MLOC_10864.1	None	Available	None	contig_155995 (Mapped)
MLOC_25248.1	None	Available	None	contig_1680006 (Not mapped)
MLOC_2630.1	None	Available	None	contig_1234930 (Not mapped)
MLOC_28342.1	None	Available	None	contig_190993 (Not mapped)
MLOC_30676.1	None	Available	None	contig_2117877 (Not mapped)
MLOC_30856.1	None	Available	None	contig_2133488 (Not mapped)
MLOC_40829.1	None	Available	None	contig_256529 (Mapped)
MLOC_46423.1	None	Available	None	contig_29007 (Not mapped)
MLOC_49059.1	None	Available	None	contig_33468 (Not mapped)
MLOC_49267.1	None	Available	None	contig_338798 (Mapped)
MLOC_52892.1	None	Available	None	contig_378873 (Not mapped)
MLOC_54702.1	None	Available	None	contig_393235 (Mapped)
MLOC_70914.1	None	Available	Available	contig_58773 (Mapped)
MLOC_78399.1	None	Available	None	contig_800647 (Not mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-