MLOC_52848 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains84.232451.955358.734852.8685
LEAShoots from the seedlings (10 cm shoot stage)27.148519.541333.697118.945
INF1Young developing inflorescences (5mm)18.934426.241227.286416.5182
INF2Developing inflorescences (1-1.5 cm)12.575615.696812.580912.804
ROORoots from the seedlings (10 cm shoot stage)77.552247.476652.767750.4087
NODDeveloping tillers at six leaf stage, 3rd internode55.076349.620921.3587122.57
CAR5Developing grain, bracts removed (5 DPA)18.606320.184620.670315.81
CAR15Developing grain, bracts removed (15 DPA)5.036625.969184.999810.2903



CDS Structure of MLOC_52848






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52848.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251888.1NoneNoneNoneNone
AK376440NoneNoneNoneNone
MLOC_52848.1NoneAvailableAvailablecontig_37847 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g45320.1 -2 2e-19 84 39/50 (78%) 13107.m04773 protein COX VIIa, putative, expressed
TAIR PP10 AT4G21105.1 -2 1e-14 66 30/50 (60%) cytochrome-c oxidases;electron carriers | chr4:11266273-11266724 FORWARD LENGTH=68