MLOC_52836 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.646120.093319.537718.0436
LEAShoots from the seedlings (10 cm shoot stage)19.750223.490923.83518.086
INF1Young developing inflorescences (5mm)12.015713.661115.360910.9902
INF2Developing inflorescences (1-1.5 cm)16.807915.693115.447616.8583
ROORoots from the seedlings (10 cm shoot stage)15.209320.791516.160622.0955
NODDeveloping tillers at six leaf stage, 3rd internode18.205219.309415.945458.5807
CAR5Developing grain, bracts removed (5 DPA)18.792719.063519.694717.7749
CAR15Developing grain, bracts removed (15 DPA)8.999278.363588.5679719.5653



CDS Structure of MLOC_52836






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52836.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251892.1NoneNoneNoneNone
MLOC_52836.1CUST_3017_PI427708080AvailableAvailablecontig_37836 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g18880.1 +2 5e-174 521 319/539 (59%) 13111.m01904 protein UBX domain-containing protein, putative, expressed
TAIR PP10 AT2G43210.2 +2 2e-70 245 181/531 (34%) Ubiquitin-like superfamily protein | chr2:17960942-17963560 FORWARD LENGTH=531