MLOC_52822 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.724650.5732240.8159960.597242
LEAShoots from the seedlings (10 cm shoot stage)0.8635930.9378120.8632850.681133
INF1Young developing inflorescences (5mm)1.784141.644881.460051.26124
INF2Developing inflorescences (1-1.5 cm)1.414771.851211.460921.57827
ROORoots from the seedlings (10 cm shoot stage)0.6034380.8371940.6439940.794178
NODDeveloping tillers at six leaf stage, 3rd internode0.9340940.5041190.5549221.4022
CAR5Developing grain, bracts removed (5 DPA)1.250560.8987771.240220.939267
CAR15Developing grain, bracts removed (15 DPA)0.3064340.2582950.2161240.55767



CDS Structure of MLOC_52822






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52822.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52822.2CUST_12982_PI427708080AvailableAvailablecontig_37823 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g41650.1 +2 0.0 1136 568/772 (74%) 13101.m04272 protein pentatricopeptide, putative, expressed
TAIR PP10 AT4G13650.1 +2 2e-135 447 250/743 (34%) Pentatricopeptide repeat (PPR) superfamily protein | chr4:7939611-7942898 REVERSE LENGTH=1064