MLOC_52821 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.697117.844815.963317.5458
LEAShoots from the seedlings (10 cm shoot stage)10.14036.620616.701666.71968
INF1Young developing inflorescences (5mm)52.254550.77248.572344.0266
INF2Developing inflorescences (1-1.5 cm)80.756968.634670.337381.6847
ROORoots from the seedlings (10 cm shoot stage)11.708518.617415.957521.3763
NODDeveloping tillers at six leaf stage, 3rd internode3.52785.206158.08219.6861
CAR5Developing grain, bracts removed (5 DPA)28.143925.969228.104927.6665
CAR15Developing grain, bracts removed (15 DPA)8.469247.66697.9567718.9108



CDS Structure of MLOC_52821






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52821.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250827.1NoneNoneNoneNone
MLOC_52821.2CUST_3014_PI427708080AvailableAvailablecontig_37823 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g41640.1 +1 0.0 781 441/525 (84%) 13101.m04271 protein expressed protein
TAIR PP10 AT5G11780.1 +1 2e-39 152 155/512 (30%) unknown protein; Has 37 Blast hits to 37 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:3793928-3795983 FORWARD LENGTH=504