MLOC_52820 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains112.88176.836670.911987.9444
LEAShoots from the seedlings (10 cm shoot stage)6.394711.007231.206112.31952
INF1Young developing inflorescences (5mm)69.346687.32489.603378.266
INF2Developing inflorescences (1-1.5 cm)106.7107.679109.327130.896
ROORoots from the seedlings (10 cm shoot stage)140.99191.244895.3405113.327
NODDeveloping tillers at six leaf stage, 3rd internode7.525936.412250.21324112.3783
CAR5Developing grain, bracts removed (5 DPA)52.948750.287945.386854.2136
CAR15Developing grain, bracts removed (15 DPA)1.983280.8255742.389494.35129



CDS Structure of MLOC_52820






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52820.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367371NoneNoneNoneNone
MLOC_52820.2CUST_18088_PI427708080AvailableAvailablecontig_37767 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g40730.1 +2 6e-133 393 194/255 (76%) 13110.m03776 protein expansin precursor, putative, expressed
TAIR PP10 AT1G65680.1 +2 3e-64 214 109/243 (45%) | Symbols: ATEXPB2, EXPB2, ATHEXP BETA 1.4 | expansin B2 | chr1:24427266-24428399 FORWARD LENGTH=273