- Predicted Gene MLOC_52820
MLOC_52820 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 112.881 | 76.8366 | 70.9119 | 87.9444 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 6.39471 | 1.00723 | 1.20611 | 2.31952 |
INF1 | Young developing inflorescences (5mm) | 69.3466 | 87.324 | 89.6033 | 78.266 |
INF2 | Developing inflorescences (1-1.5 cm) | 106.7 | 107.679 | 109.327 | 130.896 |
ROO | Roots from the seedlings (10 cm shoot stage) | 140.991 | 91.2448 | 95.3405 | 113.327 |
NOD | Developing tillers at six leaf stage, 3rd internode | 7.52593 | 6.41225 | 0.213241 | 12.3783 |
CAR5 | Developing grain, bracts removed (5 DPA) | 52.9487 | 50.2879 | 45.3868 | 54.2136 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.98328 | 0.825574 | 2.38949 | 4.35129 |
CDS Structure of MLOC_52820
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_52820.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os10g40730.1 |
+2 |
6e-133 |
393 |
194/255 (76%) |
13110.m03776 protein expansin precursor, putative, expressed |
TAIR PP10 |
AT1G65680.1 |
+2 |
3e-64 |
214 |
109/243 (45%) |
| Symbols: ATEXPB2, EXPB2, ATHEXP BETA 1.4 | expansin B2 | chr1:24427266-24428399 FORWARD LENGTH=273 |