- Predicted Gene MLOC_52810
- Gene IDMLOC_52810
- Source Contig contig_378121
MLOC_52810 FPKM values
FPKM by Treatment | FPKM by Replicate |
---|---|
There are no FPKM-by-treatment values calculated for this gene. | ![]() |
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|---|---|---|---|---|
EMB | 4-day embryos dissected from germinating grains | 7.0992 | 10.0334 | 9.53933 | 0 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 11.7279 | 5.18147 | 8.87499 | 0 |
INF1 | Young developing inflorescences (5mm) | 17.789 | 17.0535 | 17.8106 | 0 |
INF2 | Developing inflorescences (1-1.5 cm) | 19.7051 | 18.7017 | 18.1502 | 0 |
ROO | Roots from the seedlings (10 cm shoot stage) | 7.23943 | 6.77047 | 3.41819 | 0 |
NOD | Developing tillers at six leaf stage, 3rd internode | 6.26221 | 8.98562 | 9.17301 | 0 |
CAR5 | Developing grain, bracts removed (5 DPA) | 10.8206 | 13.0427 | 11.6091 | 0 |
CAR15 | Developing grain, bracts removed (15 DPA) | 7.59955 | 6.0045 | 5.84971 | 0 |
CDS Structure of MLOC_52810
![](/morexGenes/blast_net_images/MLOC_52810_assembly3_WGSMorex_rbca.fasta_genes.png)
Members of Gene Cluster
This cluster has a confidence assignment of High Confidence.The gene has a transcript that is part of a cluster represented by AK251104.1
Cluster member | Probe ID | FPKM by replicate | FPKM by treatment | Source Contig |
---|---|---|---|---|
AK251104.1 | CUST_18949_PI427708080 | None | None | None |
MLOC_17797.1 | None | Available | None | contig_1578086 (Mapped) |
MLOC_27332.1 | None | Available | None | contig_1823075 (Mapped) |
MLOC_29898.1 | None | Available | None | contig_204773 (Mapped) |
MLOC_30057.1 | None | Available | None | contig_2060671 (Mapped) |
MLOC_32270.1 | None | Available | None | contig_227033 (Not mapped) |
MLOC_32287.1 | None | Available | None | contig_227167 (Mapped) |
MLOC_35059.1 | None | Available | None | contig_2454544 (Mapped) |
MLOC_41307.1 | None | Available | None | contig_2582023 (Not mapped) |
MLOC_48366.1 | None | Available | None | contig_322239 (Not mapped) |
MLOC_52104.1 | None | Available | None | contig_372875 (Not mapped) |
MLOC_52810.1 | None | Available | None | contig_378121 (Mapped) |
MLOC_66548.1 | None | Available | Available | contig_51741 (Mapped) |
MLOC_76557.1 | None | Available | None | contig_718451 (Not mapped) |
MLOC_78514.1 | None | Available | None | contig_806502 (Not mapped) |
MLOC_78671.1 | None | Available | None | contig_813667 (Not mapped) |
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP6 | None | - | - | - | - | - |
TAIR PP10 | None | - | - | - | - | - |