MLOC_52795 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.125742.269872.485872.36662
LEAShoots from the seedlings (10 cm shoot stage)1.315251.173320.7358680.935204
INF1Young developing inflorescences (5mm)0.988030.976110.9444010.93881
INF2Developing inflorescences (1-1.5 cm)1.439390.7480270.9410131.26617
ROORoots from the seedlings (10 cm shoot stage)3.682973.461756.710474.99927
NODDeveloping tillers at six leaf stage, 3rd internode1.999611.879991.959796.02989
CAR5Developing grain, bracts removed (5 DPA)2.291021.821562.757822.55856
CAR15Developing grain, bracts removed (15 DPA)1.979792.341371.668395.62192



CDS Structure of MLOC_52795






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52795.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52795.2CUST_12979_PI427708080AvailableAvailablecontig_37799 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g12900.1 +1 0.0 775 465/694 (67%) 13107.m01341 protein cadmium/zinc-transporting ATPase, putative
TAIR PP10 AT4G30110.1 +1 0.0 738 422/712 (59%) | Symbols: HMA2, ATHMA2 | heavy metal atpase 2 | chr4:14720253-14724577 REVERSE LENGTH=951