MLOC_52788 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains428.332295.794325.151349.445
LEAShoots from the seedlings (10 cm shoot stage)175.42962.166687.292290.7694
INF1Young developing inflorescences (5mm)548.35533.801486.268486.586
INF2Developing inflorescences (1-1.5 cm)427.228482.818495.935546.541
ROORoots from the seedlings (10 cm shoot stage)395.423300.355319.63360.782
NODDeveloping tillers at six leaf stage, 3rd internode373.871404.838209.0631056.79
CAR5Developing grain, bracts removed (5 DPA)345.851372.236391.992382.889
CAR15Developing grain, bracts removed (15 DPA)99.327491.3712105.618246.581



CDS Structure of MLOC_52788






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52788.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251810.1NoneNoneNoneNone
MLOC_52788.1CUST_3011_PI427708080AvailableAvailablecontig_37796 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g14220.1 +2 0.0 815 418/432 (97%) 13111.m01455 protein tubulin/FtsZ domain containing protein, putative, expressed
TAIR PP10 AT4G14960.2 +2 0.0 818 419/432 (97%) | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548769-8550319 REVERSE LENGTH=450