MLOC_52770 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.7773613.044710.331710.3646
LEAShoots from the seedlings (10 cm shoot stage)4.040151.255522.20431.91944
INF1Young developing inflorescences (5mm)10.000512.911111.44810.0067
INF2Developing inflorescences (1-1.5 cm)9.5279211.05917.5347910.7853
ROORoots from the seedlings (10 cm shoot stage)5.3964810.24485.114479.10354
NODDeveloping tillers at six leaf stage, 3rd internode0.9515561.979960.385533.9094
CAR5Developing grain, bracts removed (5 DPA)18.090218.769113.466116.9287
CAR15Developing grain, bracts removed (15 DPA)0.8601210.9834630.7650892.21866



CDS Structure of MLOC_52770






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52770.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52770.1NoneAvailableAvailablecontig_37787 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g06790.1 -3 5e-129 390 206/239 (86%) 13106.m00704 protein OsPDIL1-5 protein disulfide isomerase PDIL1-5, expressed
TAIR PP10 AT3G16110.1 -3 2e-70 236 121/239 (51%) | Symbols: ATPDIL1-6, ATPDI4, PDI4, PDIL1-6 | PDI-like 1-6 | chr3:5460955-5463666 REVERSE LENGTH=534