MLOC_5276 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.05058950.045287400.0629148
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)000.1266790.0560573
NODDeveloping tillers at six leaf stage, 3rd internode0.064377700.01391020.0240185
CAR5Developing grain, bracts removed (5 DPA)42.207330.765822.269933.5512
CAR15Developing grain, bracts removed (15 DPA)8.2199810.299610.500425.0713



CDS Structure of MLOC_5276






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5276.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5276.1CUST_7443_PI427708083AvailableAvailablecontig_136091 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g43010.2 -2 5e-128 379 175/215 (81%) 13102.m04772 protein vacuolar-processing enzyme precursor, putative, expressed
TAIR PP10 AT1G62710.1 -2 2e-115 347 162/215 (75%) | Symbols: BETA-VPE, BETAVPE | beta vacuolar processing enzyme | chr1:23224070-23226857 REVERSE LENGTH=486