MLOC_52751 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1298150.2662730.5043930.308799
LEAShoots from the seedlings (10 cm shoot stage)000.2012740.0579807
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.17288000.0689181
ROORoots from the seedlings (10 cm shoot stage)0.1193840.1367680.1529350.151279
NODDeveloping tillers at six leaf stage, 3rd internode0.1137350.2549400.538884
CAR5Developing grain, bracts removed (5 DPA)0.05622020.05285990.05421590.0557821
CAR15Developing grain, bracts removed (15 DPA)00.148780.1856320.278696



CDS Structure of MLOC_52751






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52751.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52751.1CUST_12971_PI427708080AvailableAvailablecontig_37766 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g56235.1 +3 6e-115 340 189/267 (71%) 13101.m05947 protein expressed protein
TAIR PP10 AT1G16520.1 +3 9e-62 202 125/267 (47%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56080.1); Has 243 Blast hits to 234 proteins in 69 species: Archae - 2; Bacteria - 2; Metazoa - 61; Fungi - 9; Plants - 125; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr1:5648904-5650998 FORWARD LENGTH=325