MLOC_5275 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.164307000.199314
LEAShoots from the seedlings (10 cm shoot stage)0.086155000.0860118
INF1Young developing inflorescences (5mm)00.04887180.119910.115099
INF2Developing inflorescences (1-1.5 cm)0.0420112000.0515245
ROORoots from the seedlings (10 cm shoot stage)0.09166030.052500800.148771
NODDeveloping tillers at six leaf stage, 3rd internode0.04221070.02051990.01447850.0851256
CAR5Developing grain, bracts removed (5 DPA)47.231432.480128.056838.8174
CAR15Developing grain, bracts removed (15 DPA)14.065619.161622.933245.2366



CDS Structure of MLOC_5275






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5275.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5275.1CUST_7440_PI427708083AvailableAvailablecontig_136091 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g45470.1 -2 1e-111 336 161/216 (75%) 13104.m04561 protein vacuolar-processing enzyme precursor, putative, expressed
TAIR PP10 AT1G62710.1 -2 3e-79 251 128/220 (58%) | Symbols: BETA-VPE, BETAVPE | beta vacuolar processing enzyme | chr1:23224070-23226857 REVERSE LENGTH=486