MLOC_52740 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.8989.9459411.44911.5318
LEAShoots from the seedlings (10 cm shoot stage)8.714291.109234.042673.42641
INF1Young developing inflorescences (5mm)44.044158.471850.470345.6202
INF2Developing inflorescences (1-1.5 cm)35.211440.105839.745943.0969
ROORoots from the seedlings (10 cm shoot stage)13.90786.7946614.43698.3435
NODDeveloping tillers at six leaf stage, 3rd internode7.6051714.782611.909731.171
CAR5Developing grain, bracts removed (5 DPA)26.627431.477528.640328.3562
CAR15Developing grain, bracts removed (15 DPA)1.349260.688641.527292.89534



CDS Structure of MLOC_52740






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52740.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372426NoneNoneNoneNone
MLOC_52740.2CUST_3008_PI427708080AvailableAvailablecontig_37761 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g04250.1 +1 1e-171 496 259/310 (84%) 13106.m00377 protein phosphate-induced protein 1 conserved region domain containing protein, expressed
TAIR PP10 AT5G51550.1 +1 5e-127 380 195/299 (65%) | Symbols: EXL3 | EXORDIUM like 3 | chr5:20939793-20940806 REVERSE LENGTH=337