MLOC_52708 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.583289.5864110.088810.4937
LEAShoots from the seedlings (10 cm shoot stage)21.144416.893218.471615.8194
INF1Young developing inflorescences (5mm)4.78575.82355.491575.06065
INF2Developing inflorescences (1-1.5 cm)7.586686.249696.310728.24493
ROORoots from the seedlings (10 cm shoot stage)37.258521.266426.258128.9897
NODDeveloping tillers at six leaf stage, 3rd internode36.250939.138632.8133112.913
CAR5Developing grain, bracts removed (5 DPA)11.310615.468713.944515.4955
CAR15Developing grain, bracts removed (15 DPA)10.077811.387310.490328.7067



CDS Structure of MLOC_52708






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52708.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK360241NoneNoneNoneNone
MLOC_52708.1CUST_3007_PI427708080AvailableAvailablecontig_37730 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g35680.1 -2 3e-156 454 225/268 (84%) 13109.m03493 protein OsFBX339 - F-box domain containing protein, expressed
TAIR PP10 AT3G61060.1 -2 3e-104 320 156/267 (58%) | Symbols: AtPP2-A13, PP2-A13 | phloem protein 2-A13 | chr3:22603166-22604336 FORWARD LENGTH=290