MLOC_52707 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.714517.103718.074219.5393
LEAShoots from the seedlings (10 cm shoot stage)32.186533.082122.78725.9533
INF1Young developing inflorescences (5mm)0.03622780.03971020.2335960.0954179
INF2Developing inflorescences (1-1.5 cm)0.03684370.1697140.2339460.167854
ROORoots from the seedlings (10 cm shoot stage)21.24826.309427.631334.219
NODDeveloping tillers at six leaf stage, 3rd internode85.859758.347296.7476201.07
CAR5Developing grain, bracts removed (5 DPA)6.64866.076356.088586.38471
CAR15Developing grain, bracts removed (15 DPA)36.882535.432830.849288.0197



CDS Structure of MLOC_52707






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52707.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357585NoneNoneNoneNone
MLOC_52707.1CUST_3006_PI427708080AvailableAvailablecontig_37730 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g35690.1 +1 7e-103 306 146/174 (84%) 13109.m03494 protein zinc RING finger protein, putative, expressed
TAIR PP10 AT3G63530.2 +1 5e-32 123 56/109 (51%) | Symbols: BB, BB2 | RING/U-box superfamily protein | chr3:23456407-23457787 REVERSE LENGTH=248