MLOC_52704 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.704213.127954.230633.73885
LEAShoots from the seedlings (10 cm shoot stage)13.981148.016328.525524.2451
INF1Young developing inflorescences (5mm)1.175821.107681.053111.04285
INF2Developing inflorescences (1-1.5 cm)0.6859080.4393330.4241140.620141
ROORoots from the seedlings (10 cm shoot stage)0.1281530.213770.588030.311241
NODDeveloping tillers at six leaf stage, 3rd internode0.6138070.5671170.6776861.51728
CAR5Developing grain, bracts removed (5 DPA)5.357818.062297.228527.55915
CAR15Developing grain, bracts removed (15 DPA)0.424720.592670.441681.33786



CDS Structure of MLOC_52704






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52704.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355069NoneNoneNoneNone
MLOC_52704.1CUST_3004_PI427708080AvailableAvailablecontig_37727 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g36850.1 +3 5e-78 241 119/126 (94%) 13102.m04026 protein oxygen evolving enhancer protein 3, identical, putative, expressed
TAIR PP10 AT1G14150.1 +3 2e-53 176 81/122 (66%) | Symbols: PQL1, PQL2 | PsbQ-like 2 | chr1:4839885-4840632 FORWARD LENGTH=190