MLOC_52687 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains289.211310.97290.759314.221
LEAShoots from the seedlings (10 cm shoot stage)190.476146.884145.517142.638
INF1Young developing inflorescences (5mm)173.495161.639133.018136.953
INF2Developing inflorescences (1-1.5 cm)93.3627126.582105.203125.114
ROORoots from the seedlings (10 cm shoot stage)211.583321.63257.909379.103
NODDeveloping tillers at six leaf stage, 3rd internode148.674130.848123.739455.439
CAR5Developing grain, bracts removed (5 DPA)302.453288.334295.551296.645
CAR15Developing grain, bracts removed (15 DPA)50.209850.150345.9375116.539



CDS Structure of MLOC_52687






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52687.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251074.1NoneNoneNoneNone
MLOC_52687.1CUST_3003_PI427708080AvailableAvailablecontig_37711 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g60190.2 -1 0.0 1032 505/558 (91%) 13101.m06403 protein 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed
TAIR PP10 AT3G08590.2 -1 0.0 966 465/553 (84%) Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent | chr3:2608683-2611237 REVERSE LENGTH=560