MLOC_52678 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.47738.968279.751912.0241
LEAShoots from the seedlings (10 cm shoot stage)4.282312.010182.663322.97064
INF1Young developing inflorescences (5mm)23.316723.626522.282221.2531
INF2Developing inflorescences (1-1.5 cm)18.651421.81419.009223.5996
ROORoots from the seedlings (10 cm shoot stage)12.63549.1929910.109313.1773
NODDeveloping tillers at six leaf stage, 3rd internode1.680592.183733.911957.88603
CAR5Developing grain, bracts removed (5 DPA)4.445345.446114.975985.66256
CAR15Developing grain, bracts removed (15 DPA)1.540250.7307671.237833.18663



CDS Structure of MLOC_52678






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52678.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK253121.1NoneNoneNoneNone
MLOC_52678.1CUST_3002_PI427708080AvailableAvailablecontig_37701 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g40940.1 -2 4e-89 281 155/178 (87%) 13104.m04005 protein mitotic spindle checkpoint protein MAD2, putative, expressed
TAIR PP10 AT3G25980.2 -2 8e-83 263 142/179 (79%) | Symbols: MAD2 | DNA-binding HORMA family protein | chr3:9503232-9504402 FORWARD LENGTH=205