- Predicted Gene MLOC_52671
MLOC_52671 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 304.473 | 214.839 | 226.105 | 234.543 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 111.736 | 72.3511 | 76.7852 | 73.5408 |
| INF1 | Young developing inflorescences (5mm) | 120.73 | 113.704 | 108.967 | 92.7162 |
| INF2 | Developing inflorescences (1-1.5 cm) | 54.7393 | 62.0175 | 63.1155 | 64.8267 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 181.233 | 155.622 | 172.415 | 188.644 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 148.737 | 101.194 | 51.8514 | 322.462 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 76.3017 | 78.4817 | 78.7144 | 75.3119 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 9.15735 | 9.62096 | 11.4913 | 21.6687 |
CDS Structure of MLOC_52671
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_52671.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os03g10510.1 |
+1 |
4e-149 |
431 |
226/274 (82%) |
13103.m01178 protein outer mitochondrial membrane porin, putative, expressed |
| TAIR PP10 |
AT5G67500.1 |
+1 |
2e-109 |
328 |
172/274 (63%) |
| Symbols: VDAC2, ATVDAC2 | voltage dependent anion channel 2 | chr5:26935223-26937123 FORWARD LENGTH=276 |
