MLOC_52661 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains595.152523.555566.911586.037
LEAShoots from the seedlings (10 cm shoot stage)35.627531.80821.389726.3361
INF1Young developing inflorescences (5mm)76.4956105.29120.03487.7448
INF2Developing inflorescences (1-1.5 cm)35.693734.495737.439140.8148
ROORoots from the seedlings (10 cm shoot stage)81.7305103.22793.1184130.064
NODDeveloping tillers at six leaf stage, 3rd internode42.369311.6796.2336739.4623
CAR5Developing grain, bracts removed (5 DPA)61.635655.434160.097560.8161
CAR15Developing grain, bracts removed (15 DPA)9.452876.3984713.324821.1637



CDS Structure of MLOC_52661






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52661.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252665.1NoneNoneNoneNone
MLOC_52661.2CUST_269_PI427708083AvailableAvailablecontig_37691 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g17470.1 +2 5e-109 327 188/237 (79%) 13103.m02084 protein IN2-1 protein, putative, expressed
TAIR PP10 AT5G02790.1 +2 9e-78 244 125/212 (59%) | Symbols: GSTL3 | Glutathione S-transferase family protein | chr5:632877-634858 FORWARD LENGTH=235