MLOC_52653 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.902672.749163.407712.57285
LEAShoots from the seedlings (10 cm shoot stage)16.665223.036821.494114.0179
INF1Young developing inflorescences (5mm)2.291952.491641.963281.69484
INF2Developing inflorescences (1-1.5 cm)2.482012.176373.114232.38872
ROORoots from the seedlings (10 cm shoot stage)2.693641.815924.277222.20927
NODDeveloping tillers at six leaf stage, 3rd internode18.430420.36526.842853.6544
CAR5Developing grain, bracts removed (5 DPA)8.606557.473178.039916.45246
CAR15Developing grain, bracts removed (15 DPA)1.183141.402131.213332.61214



CDS Structure of MLOC_52653






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52653.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355357NoneNoneNoneNone
MLOC_52653.1CUST_2998_PI427708080AvailableAvailablecontig_37685 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g24480.1 +2 2e-89 303 142/171 (83%) 13101.m02589 protein DUF1399 containing protein, putative, expressed
TAIR PP10 AT4G31115.1 -2 2e-52 188 90/159 (57%) Protein of unknown function (DUF1997) | chr4:15130243-15131847 FORWARD LENGTH=250