MLOC_52640 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)2.881437.847611.10546.66457
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.060774400.1074990.0525256
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode2.632995.344127.5081817.7288
CAR5Developing grain, bracts removed (5 DPA)0.22253400.05565960.0993271
CAR15Developing grain, bracts removed (15 DPA)0.03822090.04456050.06952990.146586



CDS Structure of MLOC_52640






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52640.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358367NoneNoneNoneNone
MLOC_52640.1CUST_6962_PI427708080AvailableAvailablecontig_37675 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g49070.1 +2 6e-25 99 50/58 (86%) 13106.m05233 protein expressed protein
TAIR PP10 AT1G78995.1 +2 2e-33 121 59/94 (63%) unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29715433-29716079 REVERSE LENGTH=159