- Predicted Gene MLOC_52640
MLOC_52640 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_52640_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_52640_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0 | 0 | 0 | 0 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 2.88143 | 7.8476 | 11.1054 | 6.66457 |
INF1 | Young developing inflorescences (5mm) | 0 | 0 | 0 | 0 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.0607744 | 0 | 0.107499 | 0.0525256 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0 | 0 | 0 | 0 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.63299 | 5.34412 | 7.50818 | 17.7288 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0.222534 | 0 | 0.0556596 | 0.0993271 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.0382209 | 0.0445605 | 0.0695299 | 0.146586 |
CDS Structure of MLOC_52640
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_52640.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os06g49070.1 |
+2 |
6e-25 |
99 |
50/58 (86%) |
13106.m05233 protein expressed protein |
TAIR PP10 |
AT1G78995.1 |
+2 |
2e-33 |
121 |
59/94 (63%) |
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29715433-29716079 REVERSE LENGTH=159 |