MLOC_52639 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.038881.596791.565461.69715
LEAShoots from the seedlings (10 cm shoot stage)1.018920.7044030.8521580.698353
INF1Young developing inflorescences (5mm)7.219676.303125.619415.49142
INF2Developing inflorescences (1-1.5 cm)4.849625.5765.074385.80222
ROORoots from the seedlings (10 cm shoot stage)1.476111.859011.83481.9683
NODDeveloping tillers at six leaf stage, 3rd internode1.506330.4794240.8949161.58769
CAR5Developing grain, bracts removed (5 DPA)1.806522.526862.568472.27375
CAR15Developing grain, bracts removed (15 DPA)0.998580.6773871.174782.19348



CDS Structure of MLOC_52639






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52639.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364962NoneNoneNoneNone
MLOC_52639.2CUST_2997_PI427708080AvailableAvailablecontig_37675 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g49060.1 +1 0.0 738 395/516 (77%) 13106.m05232 protein ternary complex factor MIP1, putative, expressed
TAIR PP10 AT3G13000.1 +1 2e-171 521 279/515 (54%) Protein of unknown function, DUF547 | chr3:4158214-4160818 REVERSE LENGTH=553