MLOC_52605 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains25.734616.56221.721121.9257
LEAShoots from the seedlings (10 cm shoot stage)8.01349.3906616.826210.6281
INF1Young developing inflorescences (5mm)2.801544.405224.228253.98789
INF2Developing inflorescences (1-1.5 cm)3.763733.331413.033664.4448
ROORoots from the seedlings (10 cm shoot stage)24.069811.879518.897418.2482
NODDeveloping tillers at six leaf stage, 3rd internode3.977924.058598.6969116.5501
CAR5Developing grain, bracts removed (5 DPA)1.054691.473991.037781.47145
CAR15Developing grain, bracts removed (15 DPA)7.103548.449677.520522.5743



CDS Structure of MLOC_52605






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52605.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370294NoneNoneNoneNone
MLOC_52605.1CUST_2991_PI427708080AvailableAvailablecontig_37653 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g42120.1 +3 4e-96 288 149/198 (75%) 13105.m04479 protein heat shock protein, putative, expressed
TAIR PP10 AT5G54660.1 +3 1e-50 170 90/181 (50%) HSP20-like chaperones superfamily protein | chr5:22203950-22204986 FORWARD LENGTH=192