MLOC_52585 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.946821.097530.4055550.785497
LEAShoots from the seedlings (10 cm shoot stage)16.623927.731427.225317.4391
INF1Young developing inflorescences (5mm)2.54013.14724.520862.21525
INF2Developing inflorescences (1-1.5 cm)2.396972.244332.456182.13798
ROORoots from the seedlings (10 cm shoot stage)0.1577060.596421.041770.570584
NODDeveloping tillers at six leaf stage, 3rd internode3.06953.059613.588259.48246
CAR5Developing grain, bracts removed (5 DPA)2.389162.102162.460391.83277
CAR15Developing grain, bracts removed (15 DPA)0.5016290.3349330.6846220.895442



CDS Structure of MLOC_52585






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52585.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52585.2CUST_12947_PI427708080AvailableAvailablecontig_37639 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g19760.1 +2 2e-104 348 193/232 (83%) 13103.m02369 protein HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
TAIR PP10 AT1G56500.1 +2 6e-65 234 130/227 (57%) haloacid dehalogenase-like hydrolase family protein | chr1:21159775-21167092 FORWARD LENGTH=1055