MLOC_52583 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.81154.362025.145013.11284
LEAShoots from the seedlings (10 cm shoot stage)12.30825.32284.476115.40405
INF1Young developing inflorescences (5mm)3.240455.21064.630762.42973
INF2Developing inflorescences (1-1.5 cm)5.276955.514826.26634.67915
ROORoots from the seedlings (10 cm shoot stage)4.842995.854127.530415.00309
NODDeveloping tillers at six leaf stage, 3rd internode1.781742.322572.40566.6346
CAR5Developing grain, bracts removed (5 DPA)6.293986.47655.850664.48731
CAR15Developing grain, bracts removed (15 DPA)11.838511.514512.675218.3751



CDS Structure of MLOC_52583






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52583.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_52583.1NoneAvailableAvailablecontig_37638 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g14170.1 -3 2e-35 134 65/81 (80%) 13111.m01449 protein OsDegp12 - Putative Deg protease homologue, expressed
TAIR PP10 AT5G27660.1 -3 1e-26 108 48/71 (68%) Trypsin family protein with PDZ domain | chr5:9789835-9792235 REVERSE LENGTH=428