MLOC_52579 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.728729.873724.989527.2036
LEAShoots from the seedlings (10 cm shoot stage)20.316216.343815.26715.0798
INF1Young developing inflorescences (5mm)128.747108.476127.488104.263
INF2Developing inflorescences (1-1.5 cm)24.25714.61449.729828.8263
ROORoots from the seedlings (10 cm shoot stage)30.324231.516827.361938.666
NODDeveloping tillers at six leaf stage, 3rd internode24.542629.980310.856987.9426
CAR5Developing grain, bracts removed (5 DPA)27.257512.457511.257416.511
CAR15Developing grain, bracts removed (15 DPA)4.104933.956794.052189.51212



CDS Structure of MLOC_52579






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_52579.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363316NoneNoneNoneNone
MLOC_52579.1CUST_2989_PI427708080AvailableAvailablecontig_37634 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g10640.1 +2 0.0 1800 921/1017 (91%) 13103.m01194 protein calcium-transporting ATPase, plasma membrane-type, putative, expressed
TAIR PP10 AT4G37640.1 +2 0.0 1573 802/1018 (79%) | Symbols: ACA2 | calcium ATPase 2 | chr4:17683225-17686808 REVERSE LENGTH=1014